Robertson RC, Edens TJ, Carr L, Mutasa K, Gough EK, Evans C, Geum HY, Baharmand I, Gill SK, Ntozini R, Smith LE, Chasekwa B, Majo FD, Tavengwa NV, Mutasa B, Francis F, Tome J, Stoltzfus RJ, Humphrey JH, Prendergast AJ, Manges AR. The gut microbiome and early-life growth in a population with high prevalence of stunting. Nat Commun. 2023 Feb 14;14(1):654. doi: 10.1038/s41467-023-36135-6.
- The online version contains supplementary material available at 10.1038/s41467-023-36135-6.
- The raw metagenome sequencing data generated in this study have been deposited in the European Bioinformatics Insitute: Accession code PRJEB51728.
- Epidemiologic and final processed and annotated metagenome sequencing data files (taxa and pathways) are available at 10.5281/zenodo.7471082.
Gough EK, Edens TJ, Geum HM, Baharmand I, Gill SK, Robertson RC, Mutasa K, Ntozini R, Smith LE, Chasekwa B, Majo FD, Tavengwa NV, Mutasa B, Francis F, Carr L, Tome J, Stoltzfus RJ, Moulton LH, Prendergast AJ, Humphrey JH, Manges AR, SHINE Trial Team. Maternal fecal microbiome predicts gestational age, birth weight and neonatal growth in rural Zimbabwe. EBioMedicine. 2021 Jun;68:103421. doi: 10.1016/j.ebiom.2021.103421.
- In progress
Gough EK, Bourke CD, Berejena C, Shonhai A, Bwakura-Dangarembizi M, Prendergast AJ, Manges AR. Strain-level analysis of gut-resident pro-inflammatory viridans group Streptococci suppressed by long-term cotrimoxazole prophylaxis among HIV-positive children in Zimbabwe. Gut Microbes. 2020 Jul 3;11(4):1104-1115. doi: 10.1080/19490976.2020.1717299.
- In progress
Vincent C, Miller MA, Edens TJ, Mehrotra S, Dewar K, Manges AR. Bloom and bust: intestinal microbiota dynamics in response to hospital exposures and Clostridium difficile colonization or infection. Microbiome. 2016 Mar 14;4(1):12. doi: 10.1186/s40168-016-0156-3.
- The raw metagenome sequencing data generated in this study have been deposed at NCBI: https://www.ncbi.nlm.nih.gov/sra/SRP064400.
Vincent C, Stephens DA, Loo VG, Edens TJ, Behr MA, Dewar K, Manges AR. Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection. Microbiome 2013, 1:18 doi:10.1186/2049-2618-1-18. doi: 10.1186/2049-2618-1-18.
- In progress